MolNFT v1 · #162989 · protein
Structure of 5% reduced kpdyp in complex with cyanide
6RPE: “Structure of 5% reduced kpdyp in complex with cyanide”. X-ray diffraction, 3 ligands (HEM, MG, CYN). MolNFT v1 #162989 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6RPE
- Type
- protein
- Length
- 597 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0W8ATM9
- Ligands
- HEM, MG, CYN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 299 | — | A0A0W8ATM9 |
| B | — | protein | 298 | — | A0A0W8ATM9 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
- CYN · Cyanide ion · ion · 2 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6RPE · Structure of 5% reduced KpDyP in complex with cyanide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0W8ATM9
- Elsewhere: RCSB PDB 6RPE · PDBe 6RPE · UniProt A0A0W8ATM9
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