MolNFT v1 · #162979 · protein
Cdt of sidd, deampylase from legionella pneumophila
6RP4: “Cdt of sidd, deampylase from legionella pneumophila”. X-ray diffraction, 3 ligands (ZN, MG, NA). MolNFT v1 #162979 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6RP4
- Type
- protein
- Length
- 504 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q6RCR2
- Ligands
- ZN, MG, NA
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 125 | — | Q6RCR2 |
| B | — | protein | 127 | — | Q6RCR2 |
| C | — | protein | 124 | — | Q6RCR2 |
| D | — | protein | 128 | — | Q6RCR2 |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 4 copies · chains A, B, C, D
- NA · Sodium ion · metal · 3 copies · chains A
- GOL · Glycerol · additive · 4 copies · chains A, B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6RP4 · CDT of SidD, deAMPylase from Legionella pneumophila · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6RCR2
- Elsewhere: RCSB PDB 6RP4 · PDBe 6RP4 · UniProt Q6RCR2
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