MolNFT v1 · #162957 · protein
Alpha-1-antitrypsin (SER36ARG/GLU78ARG/GLU266ARG) in the native conformation
6ROD: “Alpha-1-antitrypsin (SER36ARG/GLU78ARG/GLU266ARG) in the native conformation”. X-ray diffraction, 3 pockets (best druggability 0.53). MolNFT v1 #162957 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ROD
- Type
- protein
- Length
- 367 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-1-antitrypsin
- UniProt
- P01009
- Pockets
- 3 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha-1-antitrypsin | protein | 367 | 29% helix, 32% strand | P01009 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 87 | 0.53 | 0.84 | 20 | empty |
| 2 | 69 | 0.51 | 0.86 | 21 | empty |
| 3 | 57 | 0.29 | 0.74 | 12 | empty |
Compared structures
- 6ROD · Alpha-1-antitrypsin (Ser36Arg/Glu78Arg/Glu266Arg) in the native conformation · the same entry in another collection · chain A against A, TM-score 1.00
- P01009 · AlphaFold monomer V2.0 prediction for alpha-1-antitrypsin (P01009) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01009
- Elsewhere: RCSB PDB 6ROD · PDBe 6ROD · UniProt P01009
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