MolNFT v1 · #162950 · protein
1YR-Y: lysozyme with re cluster 1 year on shelf
6RO5: “1YR-Y: lysozyme with re cluster 1 year on shelf”. X-ray diffraction, 5 ligands (QEB, RRE, RE). MolNFT v1 #162950 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6RO5
- Type
- protein
- Length
- 258 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00698
- Ligands
- QEB, RRE, RE, NA, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 129 | — | P00698 |
Ligands and binding sites
- QEB · [Re4(mu3-OH)4(CO)12] · ligand · 6 copies · chains A
- RRE · fac-tricarbonyl-triaqua rhenium(I) · ligand · 2 copies · chains A, B
- RE · Rhenium · metal · 13 copies · chains A, B
- NA · Sodium ion · metal · 2 copies · chains A, B
- CL · Chloride ion · ion · 4 copies · chains A, B
- ACT · Acetate ion · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6RO5 · 1Yr-Y: Lysozyme with Re Cluster 1 year on shelf · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00698
- Elsewhere: RCSB PDB 6RO5 · PDBe 6RO5 · UniProt P00698
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