MolNFT v1 · #162941 · protein
The crystal structure of thermosynechococcus elongatus protochlorophyllide oxidoreductase (por) in complex with NADP.
6RNW · NADPH-protochlorophyllide oxidoreductase: “The crystal structure of thermosynechococcus elongatus protochlorophyllide oxidoreductase (por) in complex…”. X-ray diffraction, 1 ligand (NAP), 1 pocket (best druggability 0.62). MolNFT v1…
- PDB
- 6RNW
- Type
- protein
- Length
- 271 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NADPH-protochlorophyllide oxidoreductase
- EC
- 1.3.1.33
- UniProt
- Q8DLC1
- Ligands
- NAP
- Pockets
- 1 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | NADPH-protochlorophyllide oxidoreductase (EC 1.3.1.33) | protein | 271 | 46% helix, 14% strand | Q8DLC1 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 356 | 0.62 | 0.78 | 38 | NAP |
Compared structures
- 6RNW · The crystal structure of Thermosynechococcus elongatus protochlorophyllide oxidoreductase… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DLC1
- Elsewhere: RCSB PDB 6RNW · PDBe 6RNW · UniProt Q8DLC1
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