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MolNFT v1 · #162829 · protein

Molybdenum storage protein - P212121, ADP, molybdate

6RKE: “Molybdenum storage protein - P212121, ADP, molybdate”. X-ray diffraction, 9 ligands (8M0, ADP, ATP). MolNFT v1 #162829 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6RKE
Type
protein
Length
3,238 residues
Chains
12
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P84253, P84308
Ligands
8M0, ADP, ATP, LJB, M10, LHW, MG, MOO, PO4

Structure

x-ray diffraction · 5 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
B, D, H—protein268—P84253
A, E, G, I, K—protein272—P84308
C—protein271—P84308
F—protein269—P84253
J, L—protein267—P84253

Ligands and binding sites

  • 8M0 · bis(mu4-oxo)-tetrakis(mu3-oxo)-hexakis(mu2-oxo)-hexadecaoxo-octamolybdenum (VI) · ligand · 12 copies · chains B, A, D, C, F, E, H, G, J, I, L, K
  • ADP · Adenosine-5'-diphosphate · ligand · 6 copies · chains B, A, D, C, F, E, H, G, J, I, L, K
  • ATP · Adenosine-5'-triphosphate · ligand · 6 copies · chains B, A, D, C, F, E, H, G, I, L, K
  • LJB · MO(8)-O(26) Cluster · ligand · 2 copies · chains B, D, F, H, J, L
  • M10 · (mu3-oxo)-tris(mu2-oxo)-nonakisoxo-trimolybdenum (VI) · ligand · 2 copies · chains A, C, E, G, I, K
  • LHW · MO(10)-O(35) Cluster · ligand · 2 copies · chains A, C, E, G, I, K
  • MG · Magnesium ion · metal · 12 copies · chains B, A, D, C, F, E, H, G, J, I, L, K
  • MOO · Molybdate ion · ion · 6 copies · chains B, A, D, C, F, E, H, G, J, I, L, K
  • PO4 · Phosphate ion · ion · 6 copies · chains B, D, F, H, J, I, L

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6RKE · Molybdenum storage protein - P212121, ADP, molybdate · the same entry in another collection · chain K against K, TM-score 1.00

Analyse

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