MolNFT v1 · #162816 · protein

Crystal structure of TSP1 domain from CCN3

6RK1 · Ccn family member 3: “Crystal structure of TSP1 domain from CCN3”. X-ray diffraction, 2 ligands (NA, CL). MolNFT v1 #162816 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6RK1
Type: protein
Length: 92 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ccn family member 3
UniProt: Q9QZQ5
Ligands: NA, CL

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Ccn family member 3	protein	46	0% helix, 37% strand	Q9QZQ5

Ligands and binding sites

NA · Sodium ion · metal · 3 copies · chains A, B
CL · Chloride ion · ion · 6 copies · chains A, B
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 509 Å² buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

6RK1 · Crystal structure of TSP1 domain from CCN3 · the same entry in another collection · chain A against A, TM-score 1.00
Q9QZQ5 · AlphaFold monomer V2.0 prediction for ccn family member 3 (Q9QZQ5) · a predicted model of the same protein · chain B against A, TM-score 0.80

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9QZQ5
Elsewhere: RCSB PDB 6RK1 · PDBe 6RK1 · UniProt Q9QZQ5

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