MolNFT v1 · #162705 · protein
Photorhabdus asymbiotica lectin phl in complex with 3-O-methyl-D- glucose
6RGU: “Photorhabdus asymbiotica lectin phl in complex with 3-O-methyl-D- glucose”. X-ray diffraction, 3 ligands (3MG, NA, CL), 1 pocket (best druggability 0.78). MolNFT v1 #162705 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6RGU
- Type
- protein
- Length
- 345 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lectin phl
- UniProt
- C7BLE4
- Ligands
- 3MG, NA, CL
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lectin phl | protein | 345 | 0% helix, 48% strand | C7BLE4 |
Ligands and binding sites
- 3MG · 3-O-methyl-beta-D-glucopyranose · ligand · 8 copies · chains A
- NA · Sodium ion · metal · 3 copies · chains A
- CL · Chloride ion · ion · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 646 | 0.78 | 0.84 | 41 | NA |
Compared structures
- 6RGU · Photorhabdus asymbiotica lectin PHL in complex with 3-O-methyl-D-glucose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C7BLE4
- Elsewhere: RCSB PDB 6RGU · PDBe 6RGU · UniProt C7BLE4
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