MolNFT v1 · #16269 · DNA + RNA
5'(DCPCPUPCPCPUPUP)3':(RAGGAGGAAA)5', where P=PROPYNYL
1NTT · 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3': “5'(DCPCPUPCPCPUPUP)3':(RAGGAGGAAA)5', where P=PROPYNYL”. Solution nmr. MolNFT v1 #16269 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1NTT
- Type
- DNA + RNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3'; 5'-D(*CP*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3'
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3' | rna | 9 | — | — |
| B | 5'-D(*CP*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3' | dna | 7 | — | — |
Interfaces
1 interface between chains.
- A–B · 351 Ų buried · 26 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 6 modified (nucleotide modification).
Compared structures
- 1NTT · 5'(dCPCPUPCPCPUPUP)3':(rAGGAGGAAA)5', where P=propynyl · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1NTT · PDBe 1NTT
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