MolNFT v1 · #162674 · protein
Photorhabdus laumondii lectin PLL2 in complex with D-glucose
6RFZ · Lectin PLL2 from photorhabdus laumondii: “Photorhabdus laumondii lectin PLL2 in complex with D-glucose”. X-ray diffraction, 2 ligands (BGC, NA), 1 pocket (best druggability 0.79). MolNFT v1 #162674 on GenesisL1: 3D structure…
- PDB
- 6RFZ
- Type
- protein
- Length
- 340 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lectin PLL2 from photorhabdus laumondii
- UniProt
- Q7N8I8
- Ligands
- BGC, NA
- Pockets
- 1 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lectin PLL2 from photorhabdus laumondii | protein | 340 | 0% helix, 49% strand | Q7N8I8 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 4 copies · chains A
- NA · Sodium ion · metal · chains A
- ACT · Acetate ion · additive · 6 copies · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 603 | 0.79 | 0.85 | 39 | NA |
Compared structures
- 6RFZ · Photorhabdus laumondii lectin PLL2 in complex with D-glucose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7N8I8
- Elsewhere: RCSB PDB 6RFZ · PDBe 6RFZ · UniProt Q7N8I8
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