MolNFT v1 · #162660 · protein + RNA
Structure of the complete vaccinia DNA-dependent RNA polymerase complex
6RFL: “Structure of the complete vaccinia DNA-dependent RNA polymerase complex”. Electron microscopy, 2 ligands (ZN, MG). MolNFT v1 #162660 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6RFL
- Type
- protein + RNA
- Length
- 6,257 residues
- Chains
- 16
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B9U1Q1, B9U1I0, B9U1M4, B9U1K4, Q1PIU7, B9U1G3, B9U1L2, B9U1J2, B9U1E2, B9U1M6, B9U1I2, B9U1K8, B9U1R2, B9U1D1
- Ligands
- ZN, MG
Structure
electron microscopy · 16 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 1129 | — | B9U1Q1 |
| E | — | protein | 184 | — | B9U1I0 |
| F | — | protein | 103 | — | B9U1M4 |
| G | — | protein | 153 | — | B9U1K4 |
| I | — | protein | 773 | — | Q1PIU7 |
| J | — | protein | 61 | — | B9U1G3 |
| L | — | protein | 284 | — | B9U1L2 |
| O | — | protein | 826 | — | B9U1J2 |
| R | — | protein | 129 | — | B9U1E2 |
| K | — | protein | 91 | — | B9U1M6 |
| U | — | rna | 63 | — | — |
| A | — | protein | 1272 | — | B9U1I2 |
| Q | — | protein | 124 | — | B9U1E2 |
| Y | — | protein | 600 | — | B9U1K8 |
| C | — | protein | 304 | — | B9U1R2 |
| S | — | protein | 161 | — | B9U1D1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6RFL · Structure of the complete Vaccinia DNA-dependent RNA polymerase complex · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B9U1Q1
- Every structure of UniProt B9U1I0
- Every structure of UniProt B9U1M4
- Every structure of UniProt B9U1K4
- Every structure of UniProt Q1PIU7
- Every structure of UniProt B9U1G3
- Every structure of UniProt B9U1L2
- Every structure of UniProt B9U1J2
- Every structure of UniProt B9U1E2
- Every structure of UniProt B9U1M6
- Every structure of UniProt B9U1I2
- Every structure of UniProt B9U1K8
- Every structure of UniProt B9U1R2
- Every structure of UniProt B9U1D1
- Elsewhere: RCSB PDB 6RFL · PDBe 6RFL · UniProt B9U1Q1 · UniProt B9U1I0 · UniProt B9U1M4 · UniProt B9U1K4 · UniProt Q1PIU7 · UniProt B9U1G3 · UniProt B9U1L2 · UniProt B9U1J2 · UniProt B9U1E2 · UniProt B9U1M6 · UniProt B9U1I2 · UniProt B9U1K8 · UniProt B9U1R2 · UniProt B9U1D1
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