MolNFT v1 · #162585 · protein
Cryo-EM structure of polytomella F-ATP synthase, rotary substate 1A, monomer-masked refinement
6RDI: “Cryo-EM structure of polytomella F-ATP synthase, rotary substate 1A, monomer-masked refinement”. Electron microscopy, 4 ligands (ATP, ADP, MG). MolNFT v1 #162585 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6RDI
- Type
- protein
- Length
- 7,103 residues
- Chains
- 31
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q85JD5, K0J903, D7NIZ2, A0A024FSR7, D7P897, D8V7I2, D8V7I7, D7P7X5, H8PGG3, D8V7I1, D7P7X6, Q4LDE7, A0ZW40, A0ZW41
- Ligands
- ATP, ADP, MG, ZN
Structure
electron microscopy · 21 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 0 | — | protein | 81 | — | — |
| 1 | — | protein | 595 | — | Q85JD5 |
| 2 | — | protein | 441 | — | — |
| 3 | — | protein | 245 | — | K0J903 |
| 4 | — | protein | 290 | — | D7NIZ2 |
| 5 | — | protein | 123 | — | A0A024FSR7 |
| 6 | — | protein | 124 | — | D7P897 |
| 7 | — | protein | 176 | — | D8V7I2 |
| 8 | — | protein | 88 | — | D8V7I7 |
| 9 | — | protein | 97 | — | — |
| A, B, C, D, E, F, G, H, I, J | — | protein | 74 | — | D7P7X5 |
| M | — | protein | 217 | — | H8PGG3 |
| P | — | protein | 193 | — | D8V7I1 |
| Q | — | protein | 72 | — | — |
| R | — | protein | 177 | — | D7P7X6 |
| S | — | protein | 277 | — | Q4LDE7 |
| T, U | — | protein | 523 | — | A0ZW40 |
| V | — | protein | 520 | — | A0ZW40 |
| X | — | protein | 542 | — | A0ZW41 |
| Y | — | protein | 521 | — | A0ZW41 |
| Z | — | protein | 538 | — | A0ZW41 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 3 copies · chains T, X, U, Z, V, Y
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains U, X, T, Y
- MG · Magnesium ion · metal · 5 copies · chains T, U, V, X, Y
- ZN · Zinc ion · metal · chains 6, M
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q85JD5
- Every structure of UniProt K0J903
- Every structure of UniProt D7NIZ2
- Every structure of UniProt A0A024FSR7
- Every structure of UniProt D7P897
- Every structure of UniProt D8V7I2
- Every structure of UniProt D8V7I7
- Every structure of UniProt D7P7X5
- Every structure of UniProt H8PGG3
- Every structure of UniProt D8V7I1
- Every structure of UniProt D7P7X6
- Every structure of UniProt Q4LDE7
- Every structure of UniProt A0ZW40
- Every structure of UniProt A0ZW41
- Elsewhere: RCSB PDB 6RDI · PDBe 6RDI · UniProt Q85JD5 · UniProt K0J903 · UniProt D7NIZ2 · UniProt A0A024FSR7 · UniProt D7P897 · UniProt D8V7I2 · UniProt D8V7I7 · UniProt D7P7X5 · UniProt H8PGG3 · UniProt D8V7I1 · UniProt D7P7X6 · UniProt Q4LDE7 · UniProt A0ZW40 · UniProt A0ZW41
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