MolNFT v1 · #162582 · protein
Cryoem structure of polytomella F-ATP synthase, primary rotary state 3, monomer-masked refinement
6RDF: “Cryoem structure of polytomella F-ATP synthase, primary rotary state 3, monomer-masked refinement”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #162582 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6RDF
- Type
- protein
- Length
- 2,597 residues
- Chains
- 13
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q85JD5, K0J903, D7NIZ2, A0A024FSR7, D7P897, D8V7I2, D8V7I7, H8PGG3, D8V7I1, A0ZW40
- Ligands
- ZN
Structure
electron microscopy · 13 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 0 | — | protein | 81 | — | — |
| 1 | — | protein | 595 | — | Q85JD5 |
| 2 | — | protein | 441 | — | — |
| 3 | — | protein | 245 | — | K0J903 |
| 4 | — | protein | 290 | — | D7NIZ2 |
| 5 | — | protein | 123 | — | A0A024FSR7 |
| 6 | — | protein | 124 | — | D7P897 |
| 7 | — | protein | 176 | — | D8V7I2 |
| 8 | — | protein | 88 | — | D8V7I7 |
| 9 | — | protein | 97 | — | — |
| M | — | protein | 217 | — | H8PGG3 |
| P | — | protein | 80 | — | D8V7I1 |
| T | — | protein | 40 | — | A0ZW40 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains M
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6RDF · CryoEM structure of Polytomella F-ATP synthase, Primary rotary state 3, monomer-masked… · the same entry in another collection · chain 0 against 0, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q85JD5
- Every structure of UniProt K0J903
- Every structure of UniProt D7NIZ2
- Every structure of UniProt A0A024FSR7
- Every structure of UniProt D7P897
- Every structure of UniProt D8V7I2
- Every structure of UniProt D8V7I7
- Every structure of UniProt H8PGG3
- Every structure of UniProt D8V7I1
- Every structure of UniProt A0ZW40
- Elsewhere: RCSB PDB 6RDF · PDBe 6RDF · UniProt Q85JD5 · UniProt K0J903 · UniProt D7NIZ2 · UniProt A0A024FSR7 · UniProt D7P897 · UniProt D8V7I2 · UniProt D8V7I7 · UniProt H8PGG3 · UniProt D8V7I1 · UniProt A0ZW40
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