MolNFT v1 · #162461 · protein

Crystal structure of pediococcus acidilactici lactate oxidase A94G mutant

6R9V · Putative L-lactate oxidase: “Crystal structure of pediococcus acidilactici lactate oxidase A94G mutant”. X-ray diffraction, 1 ligand (FMN), 3 pockets (best druggability 0.78). MolNFT v1 #162461 on GenesisL1: 3D structure, binding…

PDB: 6R9V
Type: protein
Length: 369 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative L-lactate oxidase
EC: 1.1.99.-
UniProt: E0NE46
Ligands: FMN
Pockets: 3 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative L-lactate oxidase (EC 1.1.99.-)	protein	369	44% helix, 14% strand	E0NE46

Ligands and binding sites

FMN · Flavin mononucleotide · ligand · chains A
GOL · Glycerol · additive · 2 copies · chains A
PG4 · Tetraethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	377	0.78	0.87	51	FMN
2	174	0.51	0.78	28	empty
3	77	0.37	0.77	16	empty

Compared structures

6R9V · Crystal structure of Pediococcus acidilactici lactate oxidase A94G mutant · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E0NE46
Elsewhere: RCSB PDB 6R9V · PDBe 6R9V · UniProt E0NE46

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