MolNFT v1 · #162359 · protein
Crystal structure of transthyretin mutant A25T in complex with CHF5074, a flurbiprofen analogue
6R6I: “Crystal structure of transthyretin mutant A25T in complex with CHF5074, a flurbiprofen analogue”. X-ray diffraction, 2 ligands (H50, PO4), 2 pockets (best druggability 0.34). MolNFT v1 #162359 on GenesisL1: 3D structure, binding…
- PDB
- 6R6I
- Type
- protein
- Length
- 231 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transthyretin
- UniProt
- P02766
- Ligands
- H50, PO4
- Pockets
- 2 · best druggability 0.34
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 53% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transthyretin | protein | 116 | 6% helix, 53% strand | P02766 |
| B | Transthyretin | protein | 115 | 6% helix, 53% strand | P02766 |
Ligands and binding sites
- H50 · 1-(3',4'-dichloro-2-fluorobiphenyl-4-yl) cyclopropanecarboxylic acid · ligand · 2 copies · chains A, B
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 91 | 0.34 | 0.74 | 17 | empty |
| 2 | 61 | 0.27 | 0.73 | 18 | PO4 |
Interfaces
1 interface between chains.
- A–B · 922 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 6R6I · Crystal structure of transthyretin mutant A25T in complex with CHF5074, a flurbiprofen… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02766
- Elsewhere: RCSB PDB 6R6I · PDBe 6R6I · UniProt P02766
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