MolNFT v1 · #162225 · protein
Crystal structure of KLGLK1 glucokinase from kluyveromyces lactis
6R2N · Glucokinase-1: “Crystal structure of KLGLK1 glucokinase from kluyveromyces lactis”. X-ray diffraction, 1 ligand (BR), 14 pockets (best druggability 0.68). MolNFT v1 #162225 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6R2N
- Type
- protein
- Length
- 1,424 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucokinase-1
- EC
- 2.7.1.2
- UniProt
- Q6CUZ3
- Ligands
- BR
- Pockets
- 14 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Glucokinase-1 (EC 2.7.1.2) | protein | 475 | 43% helix, 19% strand | Q6CUZ3 |
| B | Glucokinase-1 (EC 2.7.1.2) | protein | 474 | 44% helix, 19% strand | Q6CUZ3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
14 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 291 | 0.68 | 0.83 | 37 | empty |
| 2 | 467 | 0.62 | 0.76 | 52 | empty |
| 3 | 445 | 0.61 | 0.76 | 45 | EDO |
| 4 | 444 | 0.61 | 0.76 | 52 | EDO |
| 5 | 242 | 0.55 | 0.77 | 40 | empty |
Interfaces
2 interfaces between chains.
- B–C · 418 Ų buried · 2 hydrogen bonds · protein-protein
- A–B · 96 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- Q6CUZ3 · AlphaFold monomer V2.0 prediction for glucokinase-1 (Q6CUZ3) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6CUZ3
- Elsewhere: RCSB PDB 6R2N · PDBe 6R2N · UniProt Q6CUZ3
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