MolNFT v1 · #162212 · protein
Crystal structure of the suca domain of mycobacterium smegmatis kgd cocrystallized with succinylphosphonate
6R29: “Crystal structure of the suca domain of mycobacterium smegmatis kgd cocrystallized with succinylphosphonate”. X-ray diffraction, 2 ligands (QSP, MG). MolNFT v1 #162212 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6R29
- Type
- protein
- Length
- 1,702 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0R2B1
- Ligands
- QSP, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 847 | — | A0R2B1 |
| B | — | protein | 855 | — | A0R2B1 |
Ligands and binding sites
- QSP · (4~{S})-4-[(2~{R})-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-5-[2-[oxidanyl(phosphonooxy) phosphoryl]oxyethyl]-2~{H}-1,3-thiazol-2-yl]-4-oxidanyl-4-phosphono-butanoic acid · ligand · 2 copies · chains A, B
- MG · Magnesium ion · metal · 4 copies · chains A, B
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 5 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6R29 · Crystal structure of the SucA domain of Mycobacterium smegmatis KGD cocrystallized with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0R2B1
- Elsewhere: RCSB PDB 6R29 · PDBe 6R29 · UniProt A0R2B1
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