MolNFT v1 · #1622 · protein
Structure of the phosphatidylethanolamine-binding protein from bovine brain
1B7A: “Structure of the phosphatidylethanolamine-binding protein from bovine brain”. X-ray diffraction, 1 ligand (OPE), 2 pockets (best druggability 0.66). MolNFT v1 #1622 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1B7A
- Type
- protein
- Length
- 372 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphatidylethanolamine-binding protein
- UniProt
- P13696
- Ligands
- OPE
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Phosphatidylethanolamine-binding protein | protein | 186 | 14% helix, 28% strand | P13696 |
Ligands and binding sites
- OPE · Phosphoric acid mono-(2-amino-ethyl) ester · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 113 | 0.66 | 0.89 | 22 | OPE |
| 2 | 106 | 0.64 | 0.89 | 23 | OPE |
Interfaces
1 interface between chains.
- A–B · 666 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 1B7A · Structure of the phosphatidylethanolamine-binding protein from bovine brain · the same entry in another collection · chain A against A, TM-score 1.00
- P13696 · AlphaFold monomer V2.0 prediction for phosphatidylethanolamine- binding protein 1 (P13696) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13696
- Elsewhere: RCSB PDB 1B7A · PDBe 1B7A · UniProt P13696
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