MolNFT v1 · #162158 · protein
Histone fold domain of atnf-YB2/NF-YC3 in P212121
6R0M: “Histone fold domain of atnf-YB2/NF-YC3 in P212121”. X-ray diffraction, 4 pockets (best druggability 0.46). MolNFT v1 #162158 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6R0M
- Type
- protein
- Length
- 351 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nf-YB2; Nf-YC3
- UniProt
- A0A178UPH7, A0A178WGU5
- Pockets
- 4 · best druggability 0.46
Structure
x-ray diffraction · 3 distinct chains · 66% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Nf-YB2 | protein | 95 | 71% helix, 4% strand | A0A178UPH7 |
| B | Nf-YC3 | protein | 80 | 65% helix, 5% strand | A0A178WGU5 |
| D | Nf-YC3 | protein | 81 | 63% helix, 5% strand | A0A178WGU5 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 211 | 0.46 | 0.74 | 26 | empty |
| 2 | 152 | 0.42 | 0.74 | 26 | empty |
| 3 | 77 | 0.34 | 0.75 | 17 | empty |
| 4 | 59 | 0.32 | 0.76 | 17 | empty |
Interfaces
6 interfaces between chains.
- C–D · 2364 Ų buried · 22 hydrogen bonds · protein-protein
- A–B · 2345 Ų buried · 13 hydrogen bonds · protein-protein
- A–C · 238 Ų buried · 1 hydrogen bond · protein-protein
- A–D · 236 Ų buried · 0 hydrogen bonds · protein-protein
- B–D · 199 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 6R0M · Histone fold domain of AtNF-YB2/NF-YC3 in P212121 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A178UPH7
- Every structure of UniProt A0A178WGU5
- Elsewhere: RCSB PDB 6R0M · PDBe 6R0M · UniProt A0A178UPH7 · UniProt A0A178WGU5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.