MolNFT v1 · #162134 · protein
Getah virus macro domain
6QZU · Non-structural polyprotein: “Getah virus macro domain”. X-ray diffraction, 3 pockets (best druggability 0.57). MolNFT v1 #162134 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6QZU
- Type
- protein
- Length
- 320 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-structural polyprotein
- UniProt
- A0A143SL92
- Pockets
- 3 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Non-structural polyprotein | protein | 160 | 39% helix, 21% strand | A0A143SL92 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 170 | 0.57 | 0.81 | 26 | empty |
| 2 | 209 | 0.57 | 0.79 | 28 | empty |
| 3 | 194 | 0.54 | 0.78 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 404 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 6QZU · Getah virus macro domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A143SL92
- Elsewhere: RCSB PDB 6QZU · PDBe 6QZU · UniProt A0A143SL92
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