MolNFT v1 · #162127 · protein
H30 mnsod-3 mutant I
6QZM · Superoxide dismutase [mn] 2, mitochondrial: “H30 mnsod-3 mutant I”. X-ray diffraction, 2 ligands (MN, SO4), 1 pocket (best druggability 0.25). MolNFT v1 #162127 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6QZM
- Type
- protein
- Length
- 388 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Superoxide dismutase [mn] 2, mitochondrial
- EC
- 1.15.1.1
- UniProt
- P41977
- Ligands
- MN, SO4
- Pockets
- 1 · best druggability 0.25
Structure
x-ray diffraction · 1 distinct chain · 56% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Superoxide dismutase [mn] 2, mitochondrial (EC 1.15.1.1) | protein | 194 | 56% helix, 13% strand | P41977 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 2 copies · chains A, C
- SO4 · Sulfate ion · ion · 3 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.25 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–C · 1024 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41977
- Elsewhere: RCSB PDB 6QZM · PDBe 6QZM · UniProt P41977
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