MolNFT v1 · #162091 · protein
Streptomyces lividans ccsp mutant - H111A
6QYB · Cytosolic copper storage protein: “Streptomyces lividans ccsp mutant - H111A”. X-ray diffraction, 1 ligand (CU1), 2 pockets (best druggability 0.51). MolNFT v1 #162091 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6QYB
- Type
- protein
- Length
- 240 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytosolic copper storage protein
- UniProt
- Q9X8F4
- Ligands
- CU1
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cytosolic copper storage protein | protein | 120 | 79% helix, 0% strand | Q9X8F4 |
Ligands and binding sites
- CU1 · Copper (I) ion · metal · 39 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 125 | 0.51 | 0.81 | 30 | empty |
| 2 | 82 | 0.32 | 0.73 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 624 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 6QYB · Streptomyces lividans Ccsp mutant - H111A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X8F4
- Elsewhere: RCSB PDB 6QYB · PDBe 6QYB · UniProt Q9X8F4
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