MolNFT v1 · #162069 · protein
Protein peptide complex
6QXP: “Protein peptide complex”. X-ray diffraction, 3 ligands (NAG, BMA, MAN). MolNFT v1 #162069 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6QXP
- Type
- protein
- Length
- 3,066 residues
- Chains
- 16
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O48809, Q9FZA0
- Ligands
- NAG, BMA, MAN
Structure
x-ray diffraction · 12 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 342 | — | O48809 |
| B | — | protein | 328 | — | O48809 |
| C | — | protein | 343 | — | O48809 |
| D | — | protein | 336 | — | O48809 |
| E | — | protein | 344 | — | O48809 |
| F | — | protein | 336 | — | O48809 |
| G | — | protein | 342 | — | O48809 |
| H | — | protein | 325 | — | O48809 |
| I, L, M, O | — | protein | 47 | — | Q9FZA0 |
| J | — | protein | 46 | — | Q9FZA0 |
| K, P | — | protein | 45 | — | Q9FZA0 |
| N | — | protein | 46 | — | Q9FZA0 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 45 copies · chains A, B, C, D, E, F, M, G, H, L, O
- BMA · beta-D-mannopyranose · sugar · 10 copies · chains B, A, D, E, G
- MAN · alpha-D-mannopyranose · sugar · 3 copies · chains F, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6QXP · Protein peptide complex · the same entry in another collection · chain K against K, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O48809
- Every structure of UniProt Q9FZA0
- Elsewhere: RCSB PDB 6QXP · PDBe 6QXP · UniProt O48809 · UniProt Q9FZA0
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