MolNFT v1 · #162035 · protein

Protein peptide complex

6QWN: “Protein peptide complex”. X-ray diffraction, 3 ligands (NAG, BMA, MAN). MolNFT v1 #162035 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6QWN
Type: protein
Length: 1,904 residues
Chains: 10
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9LJ64, Q9FZA0
Ligands: NAG, BMA, MAN

Structure

x-ray diffraction · 6 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	335	—	Q9LJ64
F, G, H, I, J	—	protein	47	—	Q9FZA0
B	—	protein	338	—	Q9LJ64
C	—	protein	338	—	Q9LJ64
D	—	protein	336	—	Q9LJ64
E	—	protein	322	—	Q9LJ64

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 13 copies · chains A, B, C, D
BMA · beta-D-mannopyranose · sugar · 3 copies
MAN · alpha-D-mannopyranose · sugar

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6QWN · Protein peptide complex · the same entry in another collection · chain J against J, TM-score 1.00
Q9LJ64 · AlphaFold monomer V2.0 prediction for pollen-specific leucine-rich repeat extensin-like… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9LJ64
Every structure of UniProt Q9FZA0
Elsewhere: RCSB PDB 6QWN · PDBe 6QWN · UniProt Q9LJ64 · UniProt Q9FZA0

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