MolNFT v1 · #161989 · protein
Crystal structure of a chad domain from chlorobium tepidum
6QV7 · Uncharacterized protein: “Crystal structure of a chad domain from chlorobium tepidum”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.70). MolNFT v1 #161989 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6QV7
- Type
- protein
- Length
- 316 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q8KE09
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 78% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 316 | 78% helix, 1% strand | Q8KE09 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 8 copies · chains A
- IPA · Isopropyl alcohol · additive · 6 copies · chains A
- EDO · 1,2-ethanediol · additive · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.70 | 0.97 | 18 | empty |
| 2 | 394 | 0.56 | 0.74 | 40 | EDO, SO4 |
Compared structures
- 6QV7 · Crystal structure of a CHAD domain from Chlorobium tepidum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8KE09
- Elsewhere: RCSB PDB 6QV7 · PDBe 6QV7 · UniProt Q8KE09
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