MolNFT v1 · #161969 · protein
Thermus thermophilus V/A-type ATPASE/SYNTHASE, rotational state 1
6QUM: “Thermus thermophilus V/A-type ATPASE/SYNTHASE, rotational state 1”. Electron microscopy, 2 ligands (ADP, MG). MolNFT v1 #161969 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6QUM
- Type
- protein
- Length
- 5,874 residues
- Chains
- 26
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q56403, Q56404, O87880, P74903, Q5SIT5, P74901, P74902, Q5SIT6, Q5SIT7
- Ligands
- ADP, MG
Structure
electron microscopy · 15 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 578 | — | Q56403 |
| D | — | protein | 470 | — | Q56404 |
| E | — | protein | 469 | — | Q56404 |
| F | — | protein | 470 | — | Q56404 |
| G | — | protein | 207 | — | O87880 |
| H | — | protein | 104 | — | P74903 |
| I | — | protein | 103 | — | Q5SIT5 |
| J | — | protein | 186 | — | P74901 |
| K | — | protein | 99 | — | Q5SIT5 |
| L | — | protein | 187 | — | P74901 |
| M | — | protein | 320 | — | P74902 |
| N | — | protein | 649 | — | Q5SIT6 |
| O, P, R, S, T, U, V, W, Y, Z | — | protein | 73 | — | Q5SIT7 |
| Q | — | protein | 74 | — | Q5SIT7 |
| X | — | protein | 72 | — | Q5SIT7 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, F, G
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- Q56404 · AlphaFold monomer V2.0 prediction for V-type ATP synthase beta chain (Q56404) · a predicted model of the same protein · chain D against A, TM-score 0.98
- Q56403 · AlphaFold monomer V2.0 prediction for V-type ATP synthase alpha chain (Q56403) · a predicted model of the same protein · chain A against A, TM-score 0.97
- P74901 · AlphaFold monomer V2.0 prediction for V-type ATP synthase subunit E (P74901) · a predicted model of the same protein · chain J against A, TM-score 0.92
- O87880 · AlphaFold monomer V2.0 prediction for V-type ATP synthase subunit D (O87880) · a predicted model of the same protein · chain G against A, TM-score 0.90
- P74902 · AlphaFold monomer V2.0 prediction for V-type ATP synthase subunit C (P74902) · a predicted model of the same protein · chain M against A, TM-score 0.82
- P74903 · AlphaFold monomer V2.0 prediction for V-type ATP synthase subunit F (P74903) · a predicted model of the same protein · chain H against A, TM-score 0.70
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q56403
- Every structure of UniProt Q56404
- Every structure of UniProt O87880
- Every structure of UniProt P74903
- Every structure of UniProt Q5SIT5
- Every structure of UniProt P74901
- Every structure of UniProt P74902
- Every structure of UniProt Q5SIT6
- Every structure of UniProt Q5SIT7
- Elsewhere: RCSB PDB 6QUM · PDBe 6QUM · UniProt Q56403 · UniProt Q56404 · UniProt O87880 · UniProt P74903 · UniProt Q5SIT5 · UniProt P74901 · UniProt P74902 · UniProt Q5SIT6 · UniProt Q5SIT7
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