MolNFT v1 · #161953 · protein
Adenovirus serotype 26 (AD26) in complex with sialic acid, PH4.0
6QU6 · Fiber: “Adenovirus serotype 26 (AD26) in complex with sialic acid, PH4.0”. X-ray diffraction, 3 ligands (SIA, SLB, SO4), 1 pocket (best druggability 0.50). MolNFT v1 #161953 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6QU6
- Type
- protein
- Length
- 189 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fiber
- UniProt
- A4ZKM1
- Ligands
- SIA, SLB, SO4
- Pockets
- 1 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 8% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fiber | protein | 189 | 8% helix, 39% strand | A4ZKM1 |
Ligands and binding sites
- SIA · N-acetyl-alpha-neuraminic acid · sugar · chains A
- SLB · N-acetyl-beta-neuraminic acid · sugar · chains A
- SO4 · Sulfate ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.50 | 0.87 | 17 | empty |
Compared structures
- 6QU6 · Adenovirus Serotype 26 (Ad26) in complex with sialic acid, pH4.0 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4ZKM1
- Elsewhere: RCSB PDB 6QU6 · PDBe 6QU6 · UniProt A4ZKM1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.