MolNFT v1 · #161909 · protein
Ketosynthase (apeo) in complex with its chain length factor (apec) from xenorhabdus doucetiae
6QSP · Beta-ketoacyl synthase: “Ketosynthase (apeo) in complex with its chain length factor (apec) from xenorhabdus doucetiae”. X-ray diffraction, 1 ligand (PO4), 7 pockets (best druggability 0.78). MolNFT v1 #161909 on GenesisL1: 3D…
- PDB
- 6QSP
- Type
- protein
- Length
- 637 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-ketoacyl synthase; Uncharacterized protein
- EC
- 2.3.1.41
- UniProt
- A0A068QVX9, A0A068QZ94
- Ligands
- PO4
- Pockets
- 7 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 38% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-ketoacyl synthase (EC 2.3.1.41) | protein | 399 | 38% helix, 23% strand | A0A068QVX9 |
| B | Uncharacterized protein | protein | 238 | 37% helix, 26% strand | A0A068QZ94 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.78 | 0.97 | 29 | empty |
| 2 | 69 | 0.76 | 0.99 | 22 | GOL |
| 3 | 132 | 0.65 | 0.87 | 25 | empty |
| 4 | 254 | 0.63 | 0.81 | 38 | empty |
| 5 | 72 | 0.30 | 0.73 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 2338 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 6QSP · Ketosynthase (ApeO) in Complex with its Chain Length Factor (ApeC) from Xenorhabdus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A068QVX9
- Every structure of UniProt A0A068QZ94
- Elsewhere: RCSB PDB 6QSP · PDBe 6QSP · UniProt A0A068QVX9 · UniProt A0A068QZ94
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