MolNFT v1 · #16173 · protein
The structure of a CoA pyrophosphatase from D. radiodurans complexed with a magnesium ion
1NQZ · CoA pyrophosphatase (MUTT/NUDIX family protein): “The structure of a CoA pyrophosphatase from D. radiodurans complexed with a magnesium ion”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.45). MolNFT v1 #16173 on…
- PDB
- 1NQZ
- Type
- protein
- Length
- 171 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CoA pyrophosphatase (MUTT/NUDIX family protein)
- EC
- 3.6.1.9
- UniProt
- Q9RV46
- Ligands
- MG
- Pockets
- 1 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CoA pyrophosphatase (MUTT/NUDIX family protein) (EC 3.6.1.9) | protein | 171 | 26% helix, 38% strand | Q9RV46 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.45 | 0.82 | 20 | empty |
Compared structures
- 1NQZ · The structure of a CoA pyrophosphatase from D. Radiodurans complexed with a magnesium ion · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RV46
- Elsewhere: RCSB PDB 1NQZ · PDBe 1NQZ · UniProt Q9RV46
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