MolNFT v1 · #161704 · protein
Crystal structure of synecochoccus spermidine synthase in complex with putrescine, spermidine and mta
6QMM: “Crystal structure of synecochoccus spermidine synthase in complex with putrescine, spermidine and mta”. X-ray diffraction, 4 ligands (PUT, SPD, MTA). MolNFT v1 #161704 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6QMM
- Type
- protein
- Length
- 557 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q31QK9
- Ligands
- PUT, SPD, MTA, PXN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 277 | — | Q31QK9 |
| B | — | protein | 280 | — | Q31QK9 |
Ligands and binding sites
- PUT · 1,4-diaminobutane · ligand · chains A
- SPD · Spermidine · ligand · chains B
- MTA · 5'-deoxy-5'-methylthioadenosine · ligand · chains B
- PXN · (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6QMM · Crystal structure of Synecochoccus Spermidine Synthase in complex with putrescine… · the same entry in another collection · chain A against A, TM-score 1.00
- Q31QK9 · AlphaFold monomer V2.0 prediction for polyamine aminopropyltransferase (Q31QK9) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q31QK9
- Elsewhere: RCSB PDB 6QMM · PDBe 6QMM · UniProt Q31QK9
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