MolNFT v1 · #161621 · protein
Lytic transglycosylase, ltgg, of burkholderia pseudomallei.
6QK4 · Membrane-bound lytic murein transglycosylase a: “Lytic transglycosylase, ltgg, of burkholderia pseudomallei.”. X-ray diffraction, 3 pockets (best druggability 0.58). MolNFT v1 #161621 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6QK4
- Type
- protein
- Length
- 331 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Membrane-bound lytic murein transglycosylase a
- EC
- 4.2.2.-
- UniProt
- A0A069B8V2
- Pockets
- 3 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Membrane-bound lytic murein transglycosylase a (EC 4.2.2.-) | protein | 331 | 27% helix, 29% strand | A0A069B8V2 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.58 | 0.82 | 21 | empty |
| 2 | 125 | 0.44 | 0.77 | 23 | empty |
| 3 | 129 | 0.38 | 0.73 | 24 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6QK4 · Lytic transglycosylase, LtgG, of Burkholderia pseudomallei. · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A069B8V2
- Elsewhere: RCSB PDB 6QK4 · PDBe 6QK4 · UniProt A0A069B8V2
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