MolNFT v1 · #161575 · RNA

Crystal structure of seleno-derivative cag repeats with synthetic CMBL3A compound

6QIQ · RNA (5'-R(*GP*CP*AP*G)-D(P*(CSL))-R(P*AP*GP*C)-3'): “Crystal structure of seleno-derivative cag repeats with synthetic CMBL3A compound”. X-ray diffraction, 1 ligand (J48). MolNFT v1 #161575 on GenesisL1: 3D structure, binding sites…

PDB: 6QIQ
Type: RNA
Length: 16 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (5'-R(*GP*CP*AP*G)-D(P*(CSL))-R(P*AP*GP*C)-3')
Ligands: J48

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	RNA (5'-R(GPCPAPG)-D(P(CSL))-R(PAPGPC)-3')	rna	8	—	—

Ligands and binding sites

J48 · CMBL3a · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 299 Å² buried · 19 hydrogen bonds · nucleic-nucleic

Modifications

Observed in the structure: 2 modified (nucleotide modification).

Compared structures

6QIQ · Crystal structure of seleno-derivative CAG repeats with synthetic CMBL3a compound · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6QIQ · PDBe 6QIQ

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