MolNFT v1 · #161560 · protein
Engineered beta-lactoglobulin: variant L39Y in complex with endogenous ligand
6QI7: “Engineered beta-lactoglobulin: variant L39Y in complex with endogenous ligand”. X-ray diffraction, 1 ligand (PLM), 1 pocket (best druggability 0.62). MolNFT v1 #161560 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6QI7
- Type
- protein
- Length
- 149 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-lactoglobulin
- UniProt
- P02754
- Ligands
- PLM
- Pockets
- 1 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-lactoglobulin | protein | 149 | 17% helix, 43% strand | P02754 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 165 | 0.62 | 0.83 | 25 | PLM |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6QI7 · Engineered beta-lactoglobulin: variant L39Y in complex with endogenous ligand · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02754
- Elsewhere: RCSB PDB 6QI7 · PDBe 6QI7 · UniProt P02754
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