MolNFT v1 · #161348 · protein
Crystal structure of human cathepsin D in complex with macrocyclic inhibitor 14
6QBG: “Crystal structure of human cathepsin D in complex with macrocyclic inhibitor 14”. X-ray diffraction, 2 ligands (NAG, SO4). MolNFT v1 #161348 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6QBG
- Type
- protein
- Length
- 341 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P07339
- Ligands
- NAG, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 99 | — | P07339 |
| B | — | protein | 242 | — | P07339 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A, B
- SO4 · Sulfate ion · ion · chains B
- DMS · Dimethyl sulfoxide · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6QBG · Crystal structure of human cathepsin D in complex with macrocyclic inhibitor 14 · the same entry in another collection · chain B against B, TM-score 1.00
- P07339 · AlphaFold monomer V2.0 prediction for cathepsin D (P07339) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07339
- Elsewhere: RCSB PDB 6QBG · PDBe 6QBG · UniProt P07339
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