MolNFT v1 · #16126 · protein
Mannose-specific agglutinin (lectin) from daffodil (narcissus pseudonarcissus) bulbs in complex with mannose-ALPHA1,3-mannose
1NPL · Protein (agglutinin): “Mannose-specific agglutinin (lectin) from daffodil (narcissus pseudonarcissus) bulbs in complex with…”. X-ray diffraction, 2 ligands (MAN, PO4), 1 pocket (best druggability 0.31). MolNFT v1 #16126 on…
- PDB
- 1NPL
- Type
- protein
- Length
- 109 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (agglutinin)
- Ligands
- MAN, PO4
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (agglutinin) | protein | 109 | 0% helix, 42% strand | — |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 8 copies · chains A
- PO4 · Phosphate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.31 | 0.76 | 14 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1NPL · Mannose-specific agglutinin (lectin) from daffodil (narcissus pseudonarcissus) bulbs in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1NPL · PDBe 1NPL
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