MolNFT v1 · #161211 · protein

Complex of rice blast (magnaporthe oryzae) effector protein avr-pia with the hma domain of pikp-1 from rice (oryza sativa)

6Q76 · Resistance protein pikp-1: “Complex of rice blast (magnaporthe oryzae) effector protein avr-pia with the hma domain of pikp-1 from rice…”. X-ray diffraction, 1 pocket (best druggability 0.36). MolNFT v1 #161211 on GenesisL1: 3D…

PDB: 6Q76
Type: protein
Length: 141 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Resistance protein pikp-1; Avr-pia protein
UniProt: E9KPB5, B9WZW9
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 2 distinct chains · 15% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Resistance protein pikp-1	protein	73	29% helix, 40% strand	E9KPB5
B	Avr-pia protein	protein	68	0% helix, 46% strand	B9WZW9

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.36	0.75	24	empty

Interfaces

1 interface between chains.

A–B · 485 Å² buried · 9 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6Q76 · Complex of rice blast (Magnaporthe oryzae) effector protein AVR-Pia with the HMA domain… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E9KPB5
Every structure of UniProt B9WZW9
Elsewhere: RCSB PDB 6Q76 · PDBe 6Q76 · UniProt E9KPB5 · UniProt B9WZW9

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