MolNFT v1 · #161181 · protein
Crystal structure of porcine ACBD3 gold domain in complex with 3A protein of enterovirus-G1
6Q69 · Peripherial benzodiazepine receptor associated protein: “Crystal structure of porcine ACBD3 gold domain in complex with 3A protein of enterovirus-G1”. X-ray diffraction, 1 pocket (best druggability 0.47). MolNFT v1 #161181 on…
- PDB
- 6Q69
- Type
- protein
- Length
- 341 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peripherial benzodiazepine receptor associated protein; Genome polyprotein
- UniProt
- Q6DUB6, Q8QUZ8
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 3 distinct chains · 14% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peripherial benzodiazepine receptor associated protein | protein | 128 | 5% helix, 53% strand | Q6DUB6 |
| B, D | Genome polyprotein | protein | 43 | 56% helix, 16% strand | Q8QUZ8 |
| C | Peripherial benzodiazepine receptor associated protein | protein | 127 | 8% helix, 53% strand | Q6DUB6 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 90 | 0.47 | 0.80 | 18 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1405 Ų buried · 19 hydrogen bonds · protein-protein
- C–D · 1393 Ų buried · 20 hydrogen bonds · protein-protein
- B–D · 375 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6Q69 · Crystal structure of porcine ACBD3 GOLD domain in complex with 3A protein of… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6DUB6
- Every structure of UniProt Q8QUZ8
- Elsewhere: RCSB PDB 6Q69 · PDBe 6Q69 · UniProt Q6DUB6 · UniProt Q8QUZ8
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