MolNFT v1 · #161150 · RNA
X-ray crystal structure of the tetrahydrofolate riboswitch aptamer bound to 5-deazatetrahydropterin
6Q57: “X-ray crystal structure of the tetrahydrofolate riboswitch aptamer bound to 5-deazatetrahydropterin”. X-ray diffraction, 2 ligands (T0A, MG), 3 pockets (best druggability 0.58). MolNFT v1 #161150 on GenesisL1: 3D structure, binding…
- PDB
- 6Q57
- Type
- RNA
- Length
- 89 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tetrahydrofolate riboswitch aptamer
- Ligands
- T0A, MG
- Pockets
- 3 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tetrahydrofolate riboswitch aptamer | rna | 89 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 476 | 0.58 | 0.75 | 31 | MG |
| 2 | 356 | 0.52 | 0.74 | 20 | empty |
| 3 | 177 | 0.45 | 0.76 | 19 | MG |
Compared structures
- 6Q57 · X-ray crystal structure of the tetrahydrofolate riboswitch aptamer bound to… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6Q57 · PDBe 6Q57
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