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MolNFT v1 · #161081 · protein

The structure of the mo-insertase domain CNX1E (variant S269DD274S) from arabidopsis thaliana in complex with moco-AMP

6Q32 · Molybdopterin biosynthesis protein CNX1: “The structure of the mo-insertase domain CNX1E (variant S269DD274S) from arabidopsis thaliana in complex with…”. X-ray diffraction, 2 ligands (NWS, MG), 2 pockets (best druggability 0.52).…

PDB
6Q32
Type
protein
Length
420 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Molybdopterin biosynthesis protein CNX1
EC
2.10.1.1, 2.7.7.75
UniProt
Q39054
Ligands
NWS, MG
Pockets
2 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 21% helix, 32% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AMolybdopterin biosynthesis protein CNX1 (EC 2.10.1.1, 2.7.7.75)protein42021% helix, 32% strandQ39054

Ligands and binding sites

  • NWS · Moco-AMP · ligand · chains A
  • MG · Magnesium ion · metal · chains A
  • MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
  • PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12100.520.7733empty
21380.430.7633NWS, MG

Compared structures

  • 6Q32 · The structure of the Mo-insertase domain Cnx1E (variant S269DD274S) from Arabidopsis… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q39054 · AlphaFold monomer V2.0 prediction for molybdopterin biosynthesis protein CNX1 (Q39054) · a predicted model of the same protein · chain A against A, TM-score 1.00

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