MolNFT v1 · #16107 · protein
Crystal structure of thermostable beta-glycosidase from thermophilic eubacterium thermus nonproteolyticus HG102
1NP2: “Crystal structure of thermostable beta-glycosidase from thermophilic eubacterium thermus nonproteolyticus…”. X-ray diffraction, 6 pockets (best druggability 0.71). MolNFT v1 #16107 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1NP2
- Type
- protein
- Length
- 852 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-glycosidase
- EC
- 3.2.1.21
- UniProt
- Q9L794
- Pockets
- 6 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Beta-glycosidase (EC 3.2.1.21) | protein | 426 | 41% helix, 17% strand | Q9L794 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 436 | 0.71 | 0.81 | 38 | empty |
| 2 | 490 | 0.71 | 0.80 | 41 | empty |
| 3 | 388 | 0.67 | 0.80 | 49 | empty |
| 4 | 152 | 0.46 | 0.76 | 19 | empty |
| 5 | 120 | 0.44 | 0.77 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 658 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 1NP2 · Crystal structure of thermostable beta-glycosidase from thermophilic eubacterium Thermus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9L794
- Elsewhere: RCSB PDB 1NP2 · PDBe 1NP2 · UniProt Q9L794
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