MolNFT v1 · #160977 · protein
Cryoem derived model of na-73 Fab in complex with N9 SHANGHAI2
6PZY: “Cryoem derived model of na-73 Fab in complex with N9 SHANGHAI2”. Electron microscopy, 3 ligands (MAN, NAG, BMA). MolNFT v1 #160977 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PZY
- Type
- protein
- Length
- 2,504 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- S5MF06
- Ligands
- MAN, NAG, BMA
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, E, F | — | protein | 388 | — | S5MF06 |
| C, G, H, I | — | protein | 129 | — | — |
| D, J, K, L | — | protein | 109 | — | — |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 24 copies · chains B, E, F, A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 20 copies · chains A, C, B, G, E, H, F, I
- BMA · beta-D-mannopyranose · sugar · 4 copies · chains B, E, F, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PZY · CryoEM derived model of NA-73 Fab in complex with N9 Shanghai2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt S5MF06
- Elsewhere: RCSB PDB 6PZY · PDBe 6PZY · UniProt S5MF06
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