MolNFT v1 · #160950 · protein
Co-assembly of viqki D452(BETA-L-homoaspartic acid) with human parainfluenza virus type 3 (HPIV3) fusion glycoprotein N-terminal heptad repeat domain
6PZ6 · Fusion glycoprotein F1: “Co-assembly of viqki D452(BETA-L-homoaspartic acid) with human parainfluenza virus type 3 (HPIV3) fusion…”. X-ray diffraction, 1 ligand (NH2). MolNFT v1 #160950 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6PZ6
- Type
- protein
- Length
- 241 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fusion glycoprotein F1; Viqki D4(BETA-L-homoaspartic acid) synthetic peptid derived from…
- UniProt
- P06828
- Ligands
- NH2
Structure
x-ray diffraction · 5 distinct chains · 89% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fusion glycoprotein F1 | protein | 48 | 96% helix, 0% strand | P06828 |
| B | Viqki D4(BETA-L-homoaspartic acid) synthetic peptid derived from fusion glycoprotein F1E | protein | 34 | 76% helix, 0% strand | P06828 |
| C | Fusion glycoprotein F1 | protein | 47 | 94% helix, 0% strand | P06828 |
| D, F | Viqki D4(BETA-L-homoaspartic acid) synthetic peptid derived from fusion glycoprotein F1E | protein | 33 | 79% helix, 0% strand | P06828 |
| E | Fusion glycoprotein F1 | protein | 46 | 96% helix, 0% strand | P06828 |
Ligands and binding sites
- NH2 · Amino group · ion · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
9 interfaces between chains.
- B–C · 971 Ų buried · 9 hydrogen bonds · protein-protein
- D–E · 912 Ų buried · 9 hydrogen bonds · protein-protein
- A–F · 902 Ų buried · 9 hydrogen bonds · protein-protein
- A–B · 864 Ų buried · 13 hydrogen bonds · protein-protein
- C–D · 816 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 modified (nonstandard).
Compared structures
- 6PZ6 · Co-assembly of VIQKI D452(beta-L-homoaspartic acid) with human parainfluenza virus type 3… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06828
- Elsewhere: RCSB PDB 6PZ6 · PDBe 6PZ6 · UniProt P06828
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