MolNFT v1 · #16091 · protein
DNA polymerase beta (pol B) (E.C.2.7.7.7), 31-kd domain; soaked in the presence of MNCL2 (5 millimolar)
1NOM: “DNA polymerase beta (pol B) (E.C.2.7.7.7), 31-kd domain; soaked in the presence of MNCL2 (5 millimolar)”. X-ray diffraction, 1 ligand (MN). MolNFT v1 #16091 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1NOM
- Type
- protein
- Length
- 242 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA polymerase beta
- EC
- 2.7.7.7
- UniProt
- P06766
- Ligands
- MN
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA polymerase beta (EC 2.7.7.7) | protein | 242 | 42% helix, 17% strand | P06766 |
Ligands and binding sites
- MN · Manganese (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 1NOM · DNA polymerase beta (pol B) (E.C.2.7.7.7), 31-kd domain; soaked in the presence of MNCL2… · the same entry in another collection · chain A against A, TM-score 1.00
- P06766 · AlphaFold monomer V2.0 prediction for DNA polymerase beta (P06766) · a predicted model of the same protein · chain A against A, TM-score 0.88
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06766
- Elsewhere: RCSB PDB 1NOM · PDBe 1NOM · UniProt P06766
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