MolNFT v1 · #160854 · protein
Ewingella americana HOPBF1 kinase
6PWD · Type III effector HOPBF1: “Ewingella americana HOPBF1 kinase”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.66). MolNFT v1 #160854 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PWD
- Type
- protein
- Length
- 176 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type III effector HOPBF1
- UniProt
- A0A2N0N2I2
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type III effector HOPBF1 | protein | 176 | 35% helix, 26% strand | A0A2N0N2I2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 199 | 0.66 | 0.85 | 27 | EDO |
Compared structures
- 6PWD · Ewingella americana HopBF1 kinase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2N0N2I2
- Elsewhere: RCSB PDB 6PWD · PDBe 6PWD · UniProt A0A2N0N2I2
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