MolNFT v1 · #160810 · protein
Backbone-modified variant of zinc finger 2 from the transcription factor SP1 DNA binding domain: altered helix, loop, turn, and sheet
6PV3: “Backbone-modified variant of zinc finger 2 from the transcription factor SP1 DNA binding domain: altered…”. Solution nmr, 2 ligands (ZN, NH2). MolNFT v1 #160810 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PV3
- Type
- protein
- Length
- 30 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcription factor SP1
- UniProt
- P08047
- Ligands
- ZN, NH2
Structure
solution nmr · 1 distinct chain · 37% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcription factor SP1 | protein | 30 | 37% helix, 13% strand | P08047 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 7 modified (nonstandard).
Compared structures
- 6PV3 · Backbone-modified variant of zinc finger 2 from the transcription factor Sp1 DNA binding… · the same entry in another collection · chain A against A, TM-score 0.92
- P08047 · AlphaFold monomer V2.0 prediction for transcription factor SP1 (P08047) · a predicted model of the same protein · chain A against A, TM-score 0.74
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08047
- Elsewhere: RCSB PDB 6PV3 · PDBe 6PV3 · UniProt P08047
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