MolNFT v1 · #160794 · protein + RNA
Crystal structure of a ternary complex of fbf-2 with lst-1 (site B) and compact fbe RNA
6PUN: “Crystal structure of a ternary complex of fbf-2 with lst-1 (site B) and compact fbe RNA”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #160794 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PUN
- Type
- protein + RNA
- Length
- 830 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q09312, Q86RT0
- Ligands
- NA
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 396 | — | Q09312 |
| B | — | rna | 8 | — | — |
| C | — | protein | 388 | — | Q09312 |
| D | — | rna | 7 | — | — |
| E | — | protein | 15 | — | Q86RT0 |
| F | — | protein | 16 | — | Q86RT0 |
Ligands and binding sites
- NA · Sodium ion · metal · chains A, B
- EDO · 1,2-ethanediol · additive · 4 copies · chains A
- GOL · Glycerol · additive
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6PUN · Crystal structure of a ternary complex of FBF-2 with LST-1 (site B) and compact FBE RNA · the same entry in another collection · chain F against F, TM-score 1.00
- Q09312 · AlphaFold monomer V2.0 prediction for fem-3 mRNA-binding factor 2 (Q09312) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q09312
- Every structure of UniProt Q86RT0
- Elsewhere: RCSB PDB 6PUN · PDBe 6PUN · UniProt Q09312 · UniProt Q86RT0
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