MolNFT v1 · #160761 · protein
Dark, room temperature, pcm myxobacterial phytochrome, P2, wild type
6PTQ · Photoreceptor-histidine kinase bphp: “Dark, room temperature, pcm myxobacterial phytochrome, P2, wild type”. X-ray diffraction, 2 ligands (EL5, BEN), 10 pockets (best druggability 0.81). MolNFT v1 #160761 on GenesisL1: 3D structure…
- PDB
- 6PTQ
- Type
- protein
- Length
- 964 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Photoreceptor-histidine kinase bphp
- UniProt
- Q09E27
- Ligands
- EL5, BEN
- Pockets
- 10 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Photoreceptor-histidine kinase bphp | protein | 482 | 34% helix, 27% strand | Q09E27 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 353 | 0.81 | 0.90 | 43 | EL5 |
| 2 | 305 | 0.81 | 0.92 | 42 | EL5 |
| 3 | 351 | 0.70 | 0.83 | 38 | BEN |
| 4 | 283 | 0.60 | 0.79 | 46 | empty |
| 5 | 233 | 0.58 | 0.79 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 1590 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 6PTQ · Dark, Room Temperature, PCM Myxobacterial Phytochrome, P2, Wild Type · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q09E27
- Elsewhere: RCSB PDB 6PTQ · PDBe 6PTQ · UniProt Q09E27
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