MolNFT v1 · #160758 · protein
Crystal structure of apo exo-carrageenase GH42 from bacteroides ovatus
6PTM · Uncharacterized protein: “Crystal structure of apo exo-carrageenase GH42 from bacteroides ovatus”. X-ray diffraction, 9 pockets (best druggability 0.65). MolNFT v1 #160758 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6PTM
- Type
- protein
- Length
- 726 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- I8YN04
- Pockets
- 9 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 726 | 43% helix, 18% strand | I8YN04 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 376 | 0.65 | 0.79 | 40 | empty |
| 2 | 125 | 0.65 | 0.88 | 20 | empty |
| 3 | 437 | 0.61 | 0.76 | 54 | EDO |
| 4 | 201 | 0.52 | 0.77 | 26 | EDO |
| 5 | 179 | 0.49 | 0.77 | 24 | EDO |
Compared structures
- 6PTM · Crystal structure of apo exo-carrageenase GH42 from Bacteroides ovatus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I8YN04
- Elsewhere: RCSB PDB 6PTM · PDBe 6PTM · UniProt I8YN04
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