MolNFT v1 · #160726 · protein

Adenylate kinase from methanococcus igneus - AP5A bound form

6PSP: “Adenylate kinase from methanococcus igneus - AP5A bound form”. X-ray diffraction, 1 ligand (AP5). MolNFT v1 #160726 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6PSP
Type: protein
Length: 1,146 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P43408
Ligands: AP5

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F	—	protein	191	—	P43408

Ligands and binding sites

AP5 · Bis(adenosine)-5'-pentaphosphate · ligand · 6 copies · chains A, B, C, D, E, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6PSP · Adenylate kinase from Methanococcus igneus - AP5A bound form · the same entry in another collection · chain C against C, TM-score 1.00
P43408 · AlphaFold monomer V2.0 prediction for adenylate kinase (P43408) · a predicted model of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P43408
Elsewhere: RCSB PDB 6PSP · PDBe 6PSP · UniProt P43408

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