MolNFT v1 · #160631 · protein
Structure of the fremyella diplosiphon OCP1
6PQ1 · Orange carotenoid-binding protein: “Structure of the fremyella diplosiphon OCP1”. X-ray diffraction, 1 ligand (45D), 4 pockets (best druggability 0.84). MolNFT v1 #160631 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6PQ1
- Type
- protein
- Length
- 320 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Orange carotenoid-binding protein
- UniProt
- A0A0D6KM24
- Ligands
- 45D
- Pockets
- 4 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Orange carotenoid-binding protein | protein | 320 | 47% helix, 17% strand | A0A0D6KM24 |
Ligands and binding sites
- 45D · beta,beta-carotene-4,4'-dione · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 767 | 0.84 | 0.86 | 87 | 45D |
| 2 | 54 | 0.33 | 0.77 | 13 | empty |
| 3 | 57 | 0.31 | 0.77 | 16 | empty |
| 4 | 50 | 0.27 | 0.74 | 15 | empty |
Compared structures
- 6PQ1 · Structure of the Fremyella diplosiphon OCP1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D6KM24
- Elsewhere: RCSB PDB 6PQ1 · PDBe 6PQ1 · UniProt A0A0D6KM24
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